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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5925183_5928021_R

Intron Information:

Intron Rank:
7
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5925183 - 5928021
Intron Length:
2839

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAAACTA
5'SS Class:
major
3'SS Sequence:
GCAGTCTCTAAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTTGCTGAAAT
Flanking Amino Acid:
DPVAVQTAKTKVKNIAGLHQ
Intron Amino Acid Position:
200

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
67.8
37.3
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
57.9
0.18
1.1
55.9
39.1
Minor 5ss
36.6
-1.5
3.3
48.1
42
Minor BPS
56.7
0.29
2
78.15
43.8

Associated Gene:

Gene:
VRK2
Ensembl Gene ID:
ENSAPLG00000016420
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017140
5918294 - 5953187
34894