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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5928143_5937673_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5928143 - 5937673
Intron Length:
9531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTTTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTGTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATCC
Flanking Amino Acid:
FTSIDAHKGVAPSRRGDLEI
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
82.3
32.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.1
0.72
0.8
80.8
31.3
Minor 5ss
43.4
-0.7
3.1
60.6
44.5
Minor BPS
71.4
0.65
1.5
81.41
33.2

Associated Gene:

Gene:
VRK2
Ensembl Gene ID:
ENSAPLG00000016420
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017140
5918294 - 5953187
34894