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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59294718_59300515_R

Intron Information:

Intron Rank:
145623
Intron Class:
major
Intron Phase:
Intron Coordinates:
59294718 - 59300515
Intron Length:
5798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GATTAAA
U12 Branch Point Sequence:
AGAACAATACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
77.7
33.3
Major BPS
64.8
0.37
1.2
67.9
36.3
Major PPT
85.7
0.8
0.6
85.9
21.2
Minor 5ss
37.3
-1.4
3
46.6
48.7
Minor BPS
41
-0.6
2
55.48
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042882
59294554 - 59310605
16052