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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59301206_59310478_R

Intron Information:

Intron Rank:
145614
Intron Class:
major
Intron Phase:
Intron Coordinates:
59301206 - 59310478
Intron Length:
9273

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTAAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ATCTTTTCAACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.8
84.9
26.2
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
88.4
0.86
0.9
94.6
18.5
Minor 5ss
34
-1.8
2.8
39.2
40.5
Minor BPS
61.5
0.36
1.5
69.17
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025727
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042882
59294554 - 59310605
16052
ENSAPLT00000017223
59300527 - 59337230
36704
ENSAPLT00000044460
59301002 - 59337230
36229