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Intron Name: Anas_platyrhynchos_platyrhynchos_3_5937807_5947217_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5937807 - 5947217

Intron Length:

9411

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGCATG

5'SS Class:

strong_major

3'SS Sequence:

TCATGTCTTCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

CATTATTCATTT

Flanking Amino Acid:

LLLGYTNPHEVYLADYGLSY

Intron Amino Acid Position:

116

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.7

0.96

0.8

81.8

38.5

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

78.5

0.64

0.9

69.4

41.5

Minor 5ss

-0.8

2.9

56.9

47.4

Minor BPS

45.4

-0.2

1.9

62.01

42.4

Associated Gene:

Gene:

VRK2

Ensembl Gene ID:

ENSAPLG00000016420

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017140

5918294 - 5953187

34894