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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59386636_59387166_R

Intron Information:

Intron Rank:
144637
Intron Class:
major
Intron Phase:
Intron Coordinates:
59386636 - 59387166
Intron Length:
531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAGA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
AATACAACAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
88.7
0.87
0.7
84
31
Minor 5ss
30.2
-2.3
3.3
39.5
46.1
Minor BPS
42.1
-0.5
2
61.33
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025172
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029535
59386526 - 59388474
1949