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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59392382_59392828_R

Intron Information:

Intron Rank:
144642
Intron Class:
major
Intron Phase:
Intron Coordinates:
59392382 - 59392828
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGTGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTTGATGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTTCTTGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
72.7
32.5
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
81.4
0.71
0.9
77.3
36
Minor 5ss
45.5
-0.5
2.7
57.4
41.8
Minor BPS
69.9
0.48
1.3
69.4
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025172
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038191
59387285 - 59394262
6978