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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59392988_59394514_R

Intron Information:

Intron Rank:
144630
Intron Class:
major
Intron Phase:
Intron Coordinates:
59392988 - 59394514
Intron Length:
1527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAATTG
5'SS Class:
major
3'SS Sequence:
GTTTTTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTTT
U12 Branch Point Sequence:
GTTTTTTTCACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
65.8
40.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
87.9
0.85
0.7
83.5
31.6
Minor 5ss
39.5
-1.2
3.5
55.2
49
Minor BPS
63.6
0.42
1.7
75.16
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025172
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018833
59392948 - 59404335
11388