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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59403827_59404109_R

Intron Information:

Intron Rank:
144632
Intron Class:
major
Intron Phase:
Intron Coordinates:
59403827 - 59404109
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCACAGTT
5'SS Class:
major
3'SS Sequence:
TTTCTGTAACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTTTCTGTAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.4
69.9
41.1
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
72.9
0.52
1
67
43
Minor 5ss
37.3
-1.4
3.5
56.7
47.5
Minor BPS
71.7
0.66
2
85.93
32.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025172
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025832
59388530 - 59404335
15806
ENSAPLT00000018833
59392948 - 59404335
11388