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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59420702_59420805_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59420702 - 59420805
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
GCCGCCGGCGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTCTC
U12 Branch Point Sequence:
GTCTCCTTCTCT
Flanking Amino Acid:
LLLLVALLGPDEARGQECSG
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
74.6
37.4
Major BPS
33.6
-1
4.2
71.3
36.7
Major PPT
52.7
0.06
1
45.1
36.4
Minor 5ss
34.4
-1.8
3.2
45.9
42.3
Minor BPS
44.8
-0.3
3.6
76.39
46

Associated Gene:

Gene:
CCN2
Ensembl Gene ID:
ENSAPLG00000009248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009627
59420645 - 59422449
1805