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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59421817_59422152_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59421817 - 59422152
Intron Length:
336

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
TATATCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
ACCTTCTAAACA
Flanking Amino Acid:
CEADLEENIKKGKKCIRTPK
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
69.5
0.44
1
63.5
37.8
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
58.7
0.27
1.7
64.52
42.4

Associated Gene:

Gene:
CCN2
Ensembl Gene ID:
ENSAPLG00000009248
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009627
59420645 - 59422449
1805