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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59442197_59442933_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59442197 - 59442933
Intron Length:
737

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATC
5'SS Class:
strong_major
3'SS Sequence:
TTATGCATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTTAT
U12 Branch Point Sequence:
AGTTACTGAAAG
Flanking Amino Acid:
GLYDTPEKVKRHRGNSEVPV
Intron Amino Acid Position:
920

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.8
84.1
26.4
Major BPS
82.6
0.81
0.8
71.7
36
Major PPT
78.3
0.64
0.9
74.7
39.7
Minor 5ss
32.6
-2
3
42.8
44.4
Minor BPS
49.8
-0.1
1.8
58.65
41.9

Associated Gene:

Gene:
ENPP1
Ensembl Gene ID:
ENSAPLG00000009457
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032697
59439252 - 59495836
56585
ENSAPLT00000021275
59439252 - 59495836
56585
ENSAPLT00000009934
59440674 - 59495836
55163