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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59461444_59462167_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59461444 - 59462167
Intron Length:
724

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATTTG
5'SS Class:
major
3'SS Sequence:
TTTTCTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
ACATATTTAAAT
Flanking Amino Acid:
CLNIIFISDHGMEAGSCRKT
Intron Amino Acid Position:
526

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
73.9
37.5
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
87.7
0.85
0.8
84.5
30.4
Minor 5ss
43.3
-0.7
2.9
54.6
45
Minor BPS
56.8
0.29
1.6
69.57
40.9

Associated Gene:

Gene:
ENPP1
Ensembl Gene ID:
ENSAPLG00000009457
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032697
59439252 - 59495836
56585
ENSAPLT00000021275
59439252 - 59495836
56585
ENSAPLT00000009934
59440674 - 59495836
55163