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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59465591_59466673_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59465591 - 59466673
Intron Length:
1083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCT|GTAAGTATT
5'SS Class:
major
3'SS Sequence:
TCTTGTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAT
U12 Branch Point Sequence:
ACTTCACTAATG
Flanking Amino Acid:
FNPQWYQGQPIWLTAMYQGL
Intron Amino Acid Position:
407

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
84.2
33.6
Major BPS
74.4
0.61
0.9
73.6
28.6
Major PPT
83.2
0.75
0.8
77.3
31.5
Minor 5ss
44.6
-0.6
2.9
70.4
39.5
Minor BPS
49.7
-0.1
2
59.76
42.1

Associated Gene:

Gene:
ENPP1
Ensembl Gene ID:
ENSAPLG00000009457
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021275
59439252 - 59495836
56585
ENSAPLT00000009934
59440674 - 59495836
55163
ENSAPLT00000032697
59439252 - 59495836
56585