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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_5949052_5949850_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5949052 - 5949850
Intron Length:
799

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
ATTATTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTTTCTGTATTA
Flanking Amino Acid:
DSPCTSLPKQIRKWMNLKKI
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
80.7
33.7
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.8
0.69
0.9
74.7
39.2
Minor 5ss
38.7
-1.3
2.8
47.9
41.8
Minor BPS
53.8
0.12
2.2
74.5
38.1

Associated Gene:

Gene:
VRK2
Ensembl Gene ID:
ENSAPLG00000016420
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017140
5918294 - 5953187
34894