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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59540929_59541076_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59540929 - 59541076
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATGTAT
5'SS Class:
major
3'SS Sequence:
TATTGTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAA
U12 Branch Point Sequence:
GTATCTTGAAAT
Flanking Amino Acid:
CVNLIVLADHGMDKTYCSQL
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1
70.2
36.1
Major BPS
74.6
0.61
1
65.6
41.4
Major PPT
78.3
0.64
0.9
70.5
40.9
Minor 5ss
38.6
-1.3
3.4
52.3
46.7
Minor BPS
61.8
0.45
1.5
76.29
39.5

Associated Gene:

Gene:
ENPP3
Ensembl Gene ID:
ENSAPLG00000009807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010304
59519434 - 59561610
42177