About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59541186_59543193_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59541186 - 59543193
Intron Length:
2008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTAGT
5'SS Class:
major
3'SS Sequence:
GTTTCTCTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATGAACC
Flanking Amino Acid:
GHSFGPVSAGVIKALQLADQ
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.3
72.7
44.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
82.1
0.72
0.8
76.3
32.3
Minor 5ss
38.4
-1.3
2.8
47
41.7
Minor BPS
53
0.07
1.9
69.87
40.9

Associated Gene:

Gene:
ENPP3
Ensembl Gene ID:
ENSAPLG00000009807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010304
59519434 - 59561610
42177