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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59543267_59544329_R

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59543267 - 59544329
Intron Length:
1063

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACAGTA
5'SS Class:
major
3'SS Sequence:
TTTGTAACTTGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTGTAACT
Flanking Amino Acid:
LKWLDYNKSERPDFYTLYVE
Intron Amino Acid Position:
326

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
75.2
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
57
0.16
1.7
67.9
42.5
Minor 5ss
39.6
-1.2
3.5
56
48.2
Minor BPS
63.3
0.49
2
83.9
37.2

Associated Gene:

Gene:
ENPP3
Ensembl Gene ID:
ENSAPLG00000009807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010304
59519434 - 59561610
42177