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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59552958_59554408_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59552958 - 59554408
Intron Length:
1451

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATCAG
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATTTTATTT
Flanking Amino Acid:
CCVNYNSICKGEIPWVEEPC
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
71.2
40.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.8
0.69
0.8
78.8
34.4
Minor 5ss
32.9
-1.9
3
40.4
45.7
Minor BPS
51.4
0.12
1.6
67.09
38.2

Associated Gene:

Gene:
ENPP3
Ensembl Gene ID:
ENSAPLG00000009807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010304
59519434 - 59561610
42177