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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59554535_59555687_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59554535 - 59555687
Intron Length:
1153

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGGTCT
5'SS Class:
major
3'SS Sequence:
TTACATTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTAAT
U12 Branch Point Sequence:
TTTTTCTTACAT
Flanking Amino Acid:
WDYEDACVEPTQSWRCTNFR
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1
68.5
36.9
Major BPS
76.6
0.66
1.1
75.9
36.3
Major PPT
83.4
0.75
0.8
80.9
36.1
Minor 5ss
47.2
-0.3
3
65.2
40.3
Minor BPS
70.1
0.71
1.7
88.72
36.1

Associated Gene:

Gene:
ENPP3
Ensembl Gene ID:
ENSAPLG00000009807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010304
59519434 - 59561610
42177