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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59555811_59558299_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59555811 - 59558299
Intron Length:
2489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTA
5'SS Class:
strong_major
3'SS Sequence:
CTTCTCGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
TGGTCATTGAGA
Flanking Amino Acid:
LGLNRGAQEQVSCRHKCNEP
Intron Amino Acid Position:
65

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
85.8
25.5
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
82.1
0.72
0.8
76.4
32.2
Minor 5ss
49.9
-0
2.4
66.7
44.7
Minor BPS
50.9
0.02
2
64.3
42

Associated Gene:

Gene:
ENPP3
Ensembl Gene ID:
ENSAPLG00000009807
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010304
59519434 - 59561610
42177