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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59566825_59566935_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59566825 - 59566935
Intron Length:
111

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TCGTTTGCATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAC
U12 Branch Point Sequence:
GTGCTAATAACC
Flanking Amino Acid:
KTEVIEEAFPGMFMDTPEDE
Intron Amino Acid Position:
24

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
70.1
0.5
1
70.3
31.9
Major PPT
67
0.38
1
67
39.3
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
47
-0.2
1.8
58.79
39.4

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674