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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59568128_59568899_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59568128 - 59568899
Intron Length:
772

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCC
5'SS Class:
major
3'SS Sequence:
TGCTTTCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
GGAACATTAATT
Flanking Amino Acid:
RKIIGGVDYKGVRDLLKVIL
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
64.3
40
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
82.5
0.73
0.7
81.2
30.9
Minor 5ss
41.6
-0.9
2.7
54.6
42.5
Minor BPS
56.3
0.28
1.7
69.11
41

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674