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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59572354_59573548_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59572354 - 59573548
Intron Length:
1195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCCTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTGAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTTTTTTGAAG
Flanking Amino Acid:
PLKGLLPYDKDLFEPQTALL
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
74.4
41.9
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
87.5
0.84
0.9
90.6
22.1
Minor 5ss
49.9
-0
2.8
73.5
43.2
Minor BPS
64.4
0.31
1.5
70.73
36.5

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674