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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59573660_59580681_F

Intron Information:

Intron Rank:
10
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
59573660 - 59580681
Intron Length:
7022

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTAACACAT
5'SS Class:
weak_major
3'SS Sequence:
CTCTGCCTTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TGTATCTGATCT
Flanking Amino Acid:
GLNKQVLYCAHKQRCPVLED
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56.3
0.15
1.3
55.9
43
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
79.3
0.66
0.8
72
32.7
Minor 5ss
42.1
-0.9
3.3
66.8
43.9
Minor BPS
53.4
0.19
1.8
74.36
42

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674