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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59583834_59584468_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59583834 - 59584468
Intron Length:
635

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTGAGTTTT
5'SS Class:
major
3'SS Sequence:
CTTTGGCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TCCTACTTAATA
Flanking Amino Acid:
PIPHSLKLHHEFLQQSLRNK
Intron Amino Acid Position:
461

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
77.7
33.3
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
72.7
0.51
1
66
40
Minor 5ss
42
-0.9
3
54.7
43.6
Minor BPS
68.3
0.57
1.5
71.87
40.7

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674