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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59585032_59585600_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59585032 - 59585600
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGAAAG
5'SS Class:
major
3'SS Sequence:
TCTTTTTCATAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAA
U12 Branch Point Sequence:
GAAAACTTAACT
Flanking Amino Acid:
IESLGIKGFISQLLPTVFKS
Intron Amino Acid Position:
605

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
65.7
40
Major BPS
73.5
0.59
1
81.3
29.9
Major PPT
73.5
0.53
1
80.4
30.5
Minor 5ss
35
-1.7
3
46.2
42.8
Minor BPS
62.6
0.47
1.6
73.6
41.9

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674