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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59585776_59587488_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59585776 - 59587488
Intron Length:
1713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TCTTAGCTAACT
Flanking Amino Acid:
PQTNQNQLHLCVESTALRLI
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.4
0.93
0.8
83.2
28.5
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
93.7
0.98
0.6
92.5
17.4
Minor 5ss
34.5
-1.8
3.3
45.9
43.7
Minor BPS
48.7
-0
2.5
77.62
44.4

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674