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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59589566_59589754_F

Intron Information:

Intron Rank:
20
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
59589566 - 59589754
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TTG|GCTACAGGT
5'SS Class:
weak_major
3'SS Sequence:
GTTTAAGGTTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATATAATAATA
Flanking Amino Acid:
LLETDHINQIVHHLADFFFL
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54
0.09
1.4
56.5
44.9
Major BPS
80
0.75
1
78.6
31
Major PPT
47.9
-0.1
1.8
54.9
48.7
Minor 5ss
23.9
-3
4.1
36.5
41.7
Minor BPS
48.2
-0.1
1.8
63.45
36.2

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674