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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59591268_59592201_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59591268 - 59592201
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAAG
5'SS Class:
major
3'SS Sequence:
TTCTTCCCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
GAGTTTTTAATT
Flanking Amino Acid:
WHTKHMSYHKKYPEKLYFEG
Intron Amino Acid Position:
916

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.47
1.2
64.3
41.7
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
87.5
0.84
0.6
85.4
22
Minor 5ss
44.5
-0.6
2.7
57.1
47.2
Minor BPS
67.2
0.62
1.2
73.02
38.4

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674