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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59592419_59593200_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
59592419 - 59593200
Intron Length:
782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTTAT
U12 Branch Point Sequence:
TTCACTTTATTT
Flanking Amino Acid:
DHLGGLYKFHDRPVTYLYNT
Intron Amino Acid Position:
988

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
85.8
25.5
Major BPS
75.1
0.62
1
65.6
41
Major PPT
82.3
0.73
0.9
80.4
31.6
Minor 5ss
42
-0.9
2.9
55
43.6
Minor BPS
60.7
0.41
1.6
76.03
41.4

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674