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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59593454_59595017_F

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
59593454 - 59595017
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTGCATGAA
5'SS Class:
weak_major
3'SS Sequence:
ATTGTGACTGGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
CATTTCCAAATT
Flanking Amino Acid:
GRLVDNILLKLFNEFPNPAA
Intron Amino Acid Position:
1072

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.7
0.04
1.1
51.4
35
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
49.7
-0
1.7
55.9
44
Minor 5ss
27.7
-2.6
3.4
39.4
46.5
Minor BPS
48.8
-0
2
68.95
42.5

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674