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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59595138_59596107_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
59595138 - 59596107
Intron Length:
970

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTGAA
U12 Branch Point Sequence:
ATTTCTGAGACT
Flanking Amino Acid:
GNALLNVVLKSQPLVPRENI
Intron Amino Acid Position:
1112

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
73.4
38.9
Major BPS
72.1
0.55
1.2
63.4
44.3
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
39.5
-1.2
3
53.1
44.1
Minor BPS
49
0.01
2.3
76.71
40.5

Associated Gene:

Gene:
MED23
Ensembl Gene ID:
ENSAPLG00000010330
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010807
59565829 - 59601502
35674