Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59598407_59600471_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

59598407 - 59600471

Intron Length:

2065

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAAGTGT

5'SS Class:

strong_major

3'SS Sequence:

TCTGTGGAGACAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTGAT

U12 Branch Point Sequence:

CTGTTTTGATTT

Flanking Amino Acid:

QQERTRCMIEIGVAFYEMLL

Intron Amino Acid Position:

1249

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.8

0.73

72.8

39.1

Major BPS

96.4

1.15

0.6

85.7

34.9

Major PPT

58.3

0.19

1.2

53.2

45.2

Minor 5ss

37.8

-1.4

3.5

55.9

48.3

Minor BPS

47.9

-0

1.7

63.33

42.1

Associated Gene:

Gene:

MED23

Ensembl Gene ID:

ENSAPLG00000010330

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000010807

59565829 - 59601502

35674