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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_59835626_59891712_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
59835626 - 59891712
Intron Length:
56087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TCCTCCCCTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
AATATATTAATG
Flanking Amino Acid:
IQYRPRYITGYAVWLILWVT
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
80.7
33.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
79.3
0.66
0.7
72.6
25.8
Minor 5ss
37.5
-1.4
3
47.9
41.8
Minor BPS
51.7
-0
1.7
56.82
38.4

Associated Gene:

Gene:
NKAIN2
Ensembl Gene ID:
ENSAPLG00000003618
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045381
59756494 - 60154191
397698
ENSAPLT00000032841
59833963 - 60154191
320229
ENSAPLT00000003691
59756494 - 60154191
397698