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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60238380_60244639_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60238380 - 60244639
Intron Length:
6260

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
ATCATTTGTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTTATCATT
Flanking Amino Acid:
TPAKLENKYKIQCPSCQFVW
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
71.6
40.2
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
74.1
0.54
1
68.4
41.6
Minor 5ss
39.3
-1.2
3
49
41.4
Minor BPS
48.6
-0
2
72.64
38.9

Associated Gene:

Gene:
RNF217
Ensembl Gene ID:
ENSAPLG00000003591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046175
60203324 - 60257304
53981
ENSAPLT00000032657
60206601 - 60258703
52103
ENSAPLT00000003680
60206601 - 60258703
52103