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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60250545_60255999_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60250545 - 60255999
Intron Length:
5455

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTAATGAATT
Flanking Amino Acid:
LRRLVRGSVCAGKLLITPLI
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.2
35.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87
0.83
0.8
84.8
35.4
Minor 5ss
26.7
-2.7
3
28.5
38.4
Minor BPS
53.1
0.17
1.9
76.49
39.4

Associated Gene:

Gene:
RNF217
Ensembl Gene ID:
ENSAPLG00000003591
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046175
60203324 - 60257304
53981
ENSAPLT00000032657
60206601 - 60258703
52103
ENSAPLT00000003680
60206601 - 60258703
52103