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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60305679_60311467_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60305679 - 60311467
Intron Length:
5789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
ATTTCTTTCCTT
Flanking Amino Acid:
KEELKIELAKLEDEISTLRQ
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
80.6
33.5
Major BPS
58.7
0.22
1.2
67
38
Major PPT
85.8
0.81
0.7
84.9
30
Minor 5ss
34
-1.8
3.2
48.4
47.4
Minor BPS
44.2
-0.3
3.6
77.48
40

Associated Gene:

Gene:
TPD52L1
Ensembl Gene ID:
ENSAPLG00000003348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037490
60285393 - 60338928
53536
ENSAPLT00000027331
60285393 - 60338928
53536
ENSAPLT00000025370
60304832 - 60338928
34097
ENSAPLT00000003423
60285393 - 60338928
53536