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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60311617_60322555_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60311617 - 60322555
Intron Length:
10939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGC|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
TTTTTGTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTATCATTATTT
Flanking Amino Acid:
KSWHDMQTTSAYKKTHETLS
Intron Amino Acid Position:
95

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.4
0.39
1.3
67.6
39.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
87.7
0.85
0.7
81.2
36.5
Minor 5ss
31.5
-2.1
2.6
30.3
35.2
Minor BPS
62.4
0.47
1.9
82.24
39.1

Associated Gene:

Gene:
TPD52L1
Ensembl Gene ID:
ENSAPLG00000003348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027331
60285393 - 60338928
53536
ENSAPLT00000025370
60304832 - 60338928
34097
ENSAPLT00000003423
60285393 - 60338928
53536
ENSAPLT00000037490
60285393 - 60338928
53536