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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60322658_60331735_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60322658 - 60331735
Intron Length:
9078

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACAAGGA
5'SS Class:
major
3'SS Sequence:
TTTCATCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTCCTTATCT
Flanking Amino Acid:
TAISKKFGDMSYSIRHSISM
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.7
0.49
1.1
59.6
39.7
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
79
0.65
0.8
73
31.6
Minor 5ss
28.1
-2.5
3.5
38.8
46.3
Minor BPS
85.6
1.19
1.4
100.1
28.3

Associated Gene:

Gene:
TPD52L1
Ensembl Gene ID:
ENSAPLG00000003348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003423
60285393 - 60338928
53536