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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60325944_60343625_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
60325944 - 60343625
Intron Length:
17682

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGACAC
5'SS Class:
major
3'SS Sequence:
CTATTTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TATTTCTTACAG
Flanking Amino Acid:
RLQDFYDSTADLAPHYYPAG
Intron Amino Acid Position:
166

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1
60.4
38.4
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
85.6
0.8
0.8
80.1
31.8
Minor 5ss
38.5
-1.3
3
47.7
42.5
Minor BPS
58.1
0.12
1.8
65.42
42.2

Associated Gene:

Gene:
HDDC2
Ensembl Gene ID:
ENSAPLG00000003198
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037695
60325634 - 60351803
26170