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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60331775_60333682_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60331775 - 60333682
Intron Length:
1908

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACGC
5'SS Class:
major
3'SS Sequence:
CTTCTTCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
CTTGCTTCAACT
Flanking Amino Acid:
IRHSISMPAMRNSPTFKSFE
Intron Amino Acid Position:
142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
62.7
42.1
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
81.4
0.71
0.7
80.8
24.4
Minor 5ss
32.4
-2
3.1
43.2
43.8
Minor BPS
63.7
0.51
1.7
79.65
42.8

Associated Gene:

Gene:
TPD52L1
Ensembl Gene ID:
ENSAPLG00000003348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025370
60304832 - 60338928
34097
ENSAPLT00000003423
60285393 - 60338928
53536
ENSAPLT00000027331
60285393 - 60338928
53536