About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60333744_60337889_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
60333744 - 60337889
Intron Length:
4146

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
TGCCTTGTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTCAC
U12 Branch Point Sequence:
CTTTCTTTGCCT
Flanking Amino Acid:
KVETTVTSLKTKVGGTSHTG
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
68.4
0.46
0.9
69.3
26.9
Major PPT
78.9
0.65
0.9
76.1
37.8
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
48.6
-0
3.5
82.48
39.6

Associated Gene:

Gene:
TPD52L1
Ensembl Gene ID:
ENSAPLG00000003348
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025370
60304832 - 60338928
34097
ENSAPLT00000003423
60285393 - 60338928
53536
ENSAPLT00000027331
60285393 - 60338928
53536