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Intron Name: Anas_platyrhynchos_platyrhynchos_3_60343765_60348010_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

60343765 - 60348010

Intron Length:

4246

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTTCG

5'SS Class:

strong_major

3'SS Sequence:

CAAATCTGTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAT

U12 Branch Point Sequence:

TTTCTTATAACT

Flanking Amino Acid:

LKKEIYELWEEYENQCTAEA

Intron Amino Acid Position:

120

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.6

0.82

0.9

75.2

35.7

Major BPS

91.4

1.03

0.7

79.9

34.9

Major PPT

65.7

0.35

1.1

61.9

43.8

Minor 5ss

42.2

-0.9

2.7

51.1

39.5

Minor BPS

66.6

0.6

1.6

85.99

33.4

Associated Gene:

Gene:

HDDC2

Ensembl Gene ID:

ENSAPLG00000003198

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037695

60325634 - 60351803

26170

ENSAPLT00000037464

60342325 - 60351803

9479

ENSAPLT00000003257

60343173 - 60351803

8631