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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60350485_60351402_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
60350485 - 60351402
Intron Length:
918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
TGCTTTTTGTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGATGAAAAAAT
Flanking Amino Acid:
VSEDKNLNKDRCIRLALVHD
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.8
71.2
34.6
Major BPS
68
0.45
1
57.8
39
Major PPT
79.5
0.66
1
80.2
37.3
Minor 5ss
24.3
-3
3.1
28.4
43.8
Minor BPS
37.5
-0.8
2.3
57.4
44.2

Associated Gene:

Gene:
HDDC2
Ensembl Gene ID:
ENSAPLG00000003198
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003257
60343173 - 60351803
8631
ENSAPLT00000037695
60325634 - 60351803
26170
ENSAPLT00000037464
60342325 - 60351803
9479