Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60393508_60404328_R

Intron Information:

Intron Rank:

154613

Intron Class:

major

Intron Phase:

Intron Coordinates:

60393508 - 60404328

Intron Length:

10821

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACATCTT

5'SS Class:

major

3'SS Sequence:

AACATCTGTTTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTGTCATTAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.1

0.66

75.3

40.7

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

0.27

58.8

Minor 5ss

38.4

-1.3

3.4

58.7

45.8

Minor BPS

77.3

0.85

1.5

84.8

34.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030754

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046905

60393454 - 60404930

11477