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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60456271_60456812_F

Intron Information:

Intron Rank:
142450
Intron Class:
major
Intron Phase:
Intron Coordinates:
60456271 - 60456812
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGCGTCTC
5'SS Class:
major
3'SS Sequence:
CTTTTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
TTGTCCTTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1
66.1
39.8
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
94.5
1
0.6
88
29.4
Minor 5ss
34
-1.8
3.2
44.1
37.7
Minor BPS
70.1
0.62
1.7
78.89
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026746
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032716
60455956 - 60457962
2007