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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60498556_60504937_R

Intron Information:

Intron Rank:
154642
Intron Class:
major
Intron Phase:
Intron Coordinates:
60498556 - 60504937
Intron Length:
6382

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACTCTG
5'SS Class:
major
3'SS Sequence:
CTGGTTTGTACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACTAATAGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.6
48.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.4
0.53
1
67.9
42.5
Minor 5ss
42.9
-0.8
2.9
50.6
45.8
Minor BPS
42
-0.5
2
56.02
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030781
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019656
60498332 - 60511976
13645