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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60504458_60504937_R

Intron Information:

Intron Rank:
154639
Intron Class:
major
Intron Phase:
Intron Coordinates:
60504458 - 60504937
Intron Length:
480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAACTCTG
5'SS Class:
major
3'SS Sequence:
TCTTTGCTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
GTGATTTTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.2
63.6
48.1
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.7
0.6
0.8
69.5
36.8
Minor 5ss
42.9
-0.8
2.9
50.6
45.8
Minor BPS
67.5
0.63
1.3
76.8
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030781
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024525
60503458 - 60511976
8519
ENSAPLT00000017173
60503458 - 60510741
7284