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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_60505110_60505340_R

Intron Information:

Intron Rank:
154640
Intron Class:
major
Intron Phase:
Intron Coordinates:
60505110 - 60505340
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTTTTCAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GATTAAT
U12 Branch Point Sequence:
TTCTTTTCAAAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71.7
34.5
Major BPS
74
0.6
1.2
75.9
36.3
Major PPT
79.3
0.66
1
81.7
27.5
Minor 5ss
42.2
-0.9
3
62.5
42.2
Minor BPS
52.3
-0
1.7
60.04
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030781
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020575
60503987 - 60516298
12312
ENSAPLT00000019656
60498332 - 60511976
13645
ENSAPLT00000017173
60503458 - 60510741
7284
ENSAPLT00000027504
60503987 - 60516298
12312
ENSAPLT00000024525
60503458 - 60511976
8519